MINTS is a reproducible mechanistic-interpretability pipeline for genomic transformers. It loads DNABERT-2 and Nucleotide Transformer backends, extracts QK/OV circuit matrices, probes frozen residual streams, scores CTCF motif support from JASPAR, tests QK-to-motif alignment and matched attention enrichment, runs custom DNABERT forward-hook activation patching, and searches for distributed CTCF-aligned SAE features.
